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ERDC TN-DOER-C19
December 2000
further characterize the extent and distribution of the contamination, in a manner similar to that of
the recent field trials of the P450RGS assay.
Finally, by analyzing extracts of organisms living at contaminated sites, both cDNA array and
cell-based assays are capable of discriminating between what is present in the media (sediment, soil,
water) and what is available to the organisms, thus offering substantial savings over the use of chem-
ical analysis and chronic whole-organism bioassays.
POINTS OF CONTACT: For additional information, contact the authors, Dr. Laura S. Inouye
(601-634-2910,   );  or  Dr.  Victor  A.  McFarland
(601-634-3721, ), or the Program Manager of the
Dredging Operations Environmental Research Program, Dr. Robert M. Engler (601-634-3624,
). This technical note should be cited as follows:
Inouye, L. S., and McFarland, V. A. (2000). "Biomarker-based analysis for contaminants
in sediments/soil: Review of cell-based assays and cDNA arrays," DOER Technical
Notes Collection (ERDC TN-DOER-C19), U.S. Army Engineer Research and
Development Center, Vicksburg, MS. www.wes.army.mil/el/dots/doer
REFERENCES
Ang, C. Y., Inouye, L. S., McCant, D. D., and McFarland, V. A. (2000). "Protocols for a rapid clean-up/extraction
procedure and an improved P450RGS dioxin screening assay for sediments," DOER Technical Notes Collection
(ERDC TN-DOER-C10), U.S. Army Engineer Research and Development Center, Vicksburg, MS.
Corton, J. C., Anderson, S. P., Stauber, A. J., Janszen, D. B., Kimbell, J. S., and Connolly, R. B. (1999). "Entering the era
of toxicogenomics with DNA microarrays," CIIT Activities 19, 1-8.
Iyengar, A., Muller, F., and Maclean, N. (1996). "Regulation and expression of transgenes in fish--a review,"
Transgenic Research 5, 147-166.
McFarland, V. A., Ang, C. Y., McCant, D. D., Inouye, L. S., and Jarvis, A. S. (1999). "Comparison of two cell-based
assays for screening dioxin and dioxin-like compounds in sediments," DOER Technical Notes Collection
(TN  DOER-C8),  U.S.  Army  Engineer  Research  and  Development  Center,  Vicksburg,  MS.
McFarland, V. A., Inouye, L. S., Lutz, C. H., and Ang, C. Y. "Spatial characterization of contamination in a navigation
channel using the P450RGS cell-based assay" (in preparation). SETAC 21st Annual Meeting, Nashville, TN.
(Abstract)
Nuwaysir, E. F., Bittner, M., Trent, J., Barrett, J., and Afshari, C. A. (1999). "Microarrays and toxicology: The advent of
toxicogenomics," Molecular Carcinogenesis 24, 153-159.
Oberdorster, E., Cottam, D. M., Wilmot, F. A., Milner, M. J., and McLachlan, J. A. (1999). "Interaction of PAHs and
PCBs with ecdysone-dependent gene expression and cell proliferation," Toxicology and Applied Pharmacology
160, 101-108.
Rockett, J. C., and Dix, D. J. (1999). "Application of DNA arrays to toxicology," Environmental Health Perspectives
107, 681-685.
Routledge, E. J., and Sumpter, J. P. (1996). "Estrogenic activity of surfactants and some of their degradation products
assessed using a recombinant yeast screen," Environmental Toxicology and Chemistry 15, 241-248.
U.S. Army Engineer Waterways Experiment Station. (1998). "Guidance for performance of the H4IIE dioxin screening
assay," Technical Note DOER-C1, Vicksburg, MS. www.wes.army.mil/el/dots/doer
10

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